After Effects :: Transparent Background Of PNG File Bugged When Imported CS6

Nov 14, 2013

When I import my PNG File into AAE CS6 the background of the file becomes bugged. I have attatched a picture below

This ir the original PNG image.

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I'll attach the image and the desired result to further assist.

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I created a black and white logo in Illustrator (vector).

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When I import the file into AI or ID it comes in with an opaque white background.

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I was asked to cut out the background from a logo to make it transparent so the logo would look nice on a variety of backgrounds. I've been given a good quality jpeg file.

What I did was I selected (by colour) the background (white), inverted the selection, copied it and pasted as a new image.

It's all fine (the logo itself doesn't have any other elements) but there's still some whiteish/greyish outline around certain elements of the logo.

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The problem: I am importing a PNG sequence into After Effects (CS 5.5), however AE refuses to see the Alpha channel contained within the sequence. Now before anyone jumps the gun and says, "But wait, PNG does not really support alpha, it just supports transparency!" Right, something I just learned, and still -- quite honestly -- baffles the heck out of me.
 
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Importing sample images from each sequence reveals the EXACT SAME THING ... both have transparency, but NEITHER have an alpha-channel per se.
 
1) why in the heck AE would interpret one's transparency, and not the other?2) Is there a way to FORCE AE to see the transparency of the one?3) IF not, is there something out there that will convert the PNG's with transparency to another format (TIF, TGA, PSD) with an alpha? I just don't want to have to re-render the sequences again. 

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